PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000333.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 759aa    MW: 86745.1 Da    PI: 8.232
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000333.1_g00015.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.53.4e-2143117189
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              +fYn YA++vGF++r+ + ++s+ +g++++r+fvC keg++++              tr+gC a +kv+k ++gkw+++++++eHn
  Itr_sc000333.1_g00015.1  43 EFYNLYATKVGFRIRIGQLYRSRVDGSVISRRFVCFKEGFQTN--------------TRVGCPAFIKVQKADSGKWVIATINKEHN 114
                              6***************************************876..............799************************** PP

                     FAR1  87 Hel 89 
                              H+l
  Itr_sc000333.1_g00015.1 115 HDL 117
                              *99 PP

2FAR162.81e-19192267190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              kfY++YA ++GF+vr+ +  +sk +g+it+r+fvCskeg++++              +r+gC a ++++++++g+w+v++ + eHn
  Itr_sc000333.1_g00015.1 192 KFYSTYAANTGFKVRIGQLFRSKLDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQESGRWVVDRHQIEHN 263
                              6**************************************9998..............4899************************* PP

                     FAR1  87 Hela 90 
                              H+l 
  Itr_sc000333.1_g00015.1 264 HDLD 267
                              *995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1743117IPR004330FAR1 DNA binding domain
PfamPF031014.2E-15192267IPR004330FAR1 DNA binding domain
PfamPF105511.2E-26367459IPR018289MULE transposase domain
PROSITE profilePS5096610.423645681IPR007527Zinc finger, SWIM-type
PfamPF044343.4E-8652678IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-8656683IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MTVRAKPTGS LVLKNNAHHD DEGESRPEPY VGLEFDTAEE AQEFYNLYAT KVGFRIRIGQ  60
LYRSRVDGSV ISRRFVCFKE GFQTNTRVGC PAFIKVQKAD SGKWVIATIN KEHNHDLELP  120
GEITPARIQR KSLPAPRTTT VLSARTGLRS TDEDGPSGVL DSKRLKREEV GGEPKGEPCK  180
GLEFSSANDA YKFYSTYAAN TGFKVRIGQL FRSKLDGSIT SRRFVCSKEG HQHPSRVGCG  240
AFMRIQRQES GRWVVDRHQI EHNHDLDRPT DTNRRLSTSV VFKEEASSGL DNLDFIDSNG  300
DLTIVVRGRE SKIGSDWYAV LLEYFQTRQA EDMGFFYAVQ MCDGRAMNLF WADARSRFSC  360
TQFGDAIVFD TTYRRGSHSV PFASFVGVNH HRQPVLLGCA LIADESAESF TWVLQAWQRA  420
MSGRRPVSII ADQDWAVQHS IAQVFPGTHH RFSAWQIVSK EQENLGALLS LNPEFKYEYE  480
TCIFQSQTAN EFDAAWNVLI NKYNLKDNAW LKDMSRMRKS WVPLYIRGTF FAGIPVDGSL  540
KSYFCPMLTP QTPLNEFVLR YEKAIEEGRD EERKEDFNSL NLPTVLHTKD PIEEQCRRLY  600
TTAMFKVFQK ELMECYSYVG IKINVEGAIS RYLVQKCAPN ADERNTVAFN ASNLNISCSC  660
RMFEFEGVLC RHALKVFQIM NVRELPSRYI LHRWSKSAKY GILRDVDSGG GSQDFRALML  720
WSLREEANKF IETGATSLER YKLAFEIMQE GNRTLRWQN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056325.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
RefseqXP_015056326.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
RefseqXP_015056328.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLK4D3K80.0K4D3K8_SOLLC; Uncharacterized protein
STRINGSolyc10g084220.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73472130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7